The grim announcement comes a day after Indonesia said the submarine was considered sunk, not merely missing, but did not explicitly say whether the crew was dead.
The agency's spokesman Raditya Jati said on Sunday 1,189 houses were destroyed in several districts including Lumajang, Malang, Blitar, Jember, Trenggalek and Blitar.
Rahmat Triyono, the head of Indonesia's earthquake and tsunami center, said the undersea tremblor did not have the potential to cause a tsunami.
Relief efforts were hampered by power cuts, blocked roads covered in thick mud and debris.
Fifteen were rescued from the fishing boat and local fishermen and the navy were searching for the others.
Ashwini and Sikki had reached the second round on Wednesday after a 21-9, 17-21, 21-19 win over Denmark's Amalie Magelund and Freja Ravn.
The Badminton World Federation (BWF) and Badminton England on Thursday said that the entire Indonesian team will have to self-isolate from the date of their inbound flight after a person travelling onboard tested positive for coronavirus.
Police were still investigating the cause of the accident, but survivors told authorities that the vehicle's brakes apparently malfunctioned.
Illegal or informal mining operations are commonplace in Indonesia, providing a tenuous livelihood to those who labour in conditions with a high risk of serious injury or death.
The mud that rolled from the surrounding hills late Sunday struck at least eight houses, leaving 21 people buried under tons of mud.
The men were arrested in November after residents became suspicious and broke into their rented room where they were caught having sex.
A total of 22 people were working at the mine when the accident took place, 12 of whom escaped but suffered wounds, according to an official.
Prannoy recovered from a game down to beat sixth seed Christie 18-21 21-16 23-21 in a match that lasted an hour and 15 minutes.
Those with serious injuries have been treated in hospitals and field hospitals set up after the shallow under-land quake struck Mamuju city and Majene district on Friday, National Disaster Management Agency's spokesman Raditya Jati told
"A Sriwijaya (Air) plane from Jakarta to Pontianak (on Borneo island) with call sign SJY182 has lost contact," said ministry spokesman Adita Irawati.
More than 100 million Indonesians are registered to vote in the poll staffed by almost 2.7 million election workers, some of whom were tasked with taking ballot boxes to hospitalised Covid patients.